4NAG

Xanthomonins I III are a New Class of Lasso Peptides Featuringa Seven-Membered Macrolactam Ring


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.81 Å

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Xanthomonins I-III: A New Class of Lasso Peptides with a Seven-Residue Macrolactam Ring.

Hegemann, J.D.Zimmermann, M.Zhu, S.Steuber, H.Harms, K.Xie, X.Marahiel, M.A.

(2014) Angew Chem Int Ed Engl 53: 2230-2234

  • DOI: https://doi.org/10.1002/anie.201309267
  • Primary Citation of Related Structures:  
    4NAG

  • PubMed Abstract: 

    Lasso peptides belong to the class of ribosomally synthesized and post-translationally modified peptides. Their common distinguishing feature is an N-terminal macrolactam ring that is threaded by the C-terminal tail. This lasso fold is maintained through steric interactions. The isolation and characterization of xanthomonins I-III, the first lasso peptides featuring macrolactam rings consisting of only seven amino acids, is now presented. The crystal structure of xanthomonin I and the NMR structure of xanthomonin II were also determined. A total of 25 variants of xanthomonin II were generated to probe different aspects of the biosynthesis, stability, and fold maintenance. These mutational studies reveal the limits such a small ring imposes on the threading and show that every plug amino acid larger than serine is able to maintain a heat-stable lasso fold in the xanthomonin II scaffold.


  • Organizational Affiliation

    Fachbereich Chemie, Fachgebiet Biochemie und LOEWE-Zentrum für Synthetische, Mikrobiologie, Philipps-Universität Marburg, Meerwein-Strasse 4, 35032 Marburg (Germany).


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Xanthomonin I
A, B
16Xanthomonas hortorum ATCC 19865Mutation(s): 0 
Gene Names: XGA_4058
UniProt
Find proteins for F0CAT0 (Xanthomonas hortorum ATCC 19865)
Explore F0CAT0 
Go to UniProtKB:  F0CAT0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF0CAT0
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
HEZ
Query on HEZ

Download Ideal Coordinates CCD File 
C [auth A]HEXANE-1,6-DIOL
C6 H14 O2
XXMIOPMDWAUFGU-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.81 Å
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 13.804α = 90
b = 45.096β = 91.42
c = 13.89γ = 90
Software Package:
Software NamePurpose
SHELXmodel building
SHELXL-97refinement
SHELXphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-04-30
    Type: Initial release
  • Version 1.1: 2014-05-21
    Changes: Database references