4KYX

Crystal structure of ADP-ribose pyrophosphatase MutT from Rickettsia felis

PDB DOI: https://doi.org/10.2210/pdb4KYX/pdb

Classification: HYDROLASE
Organism(s): Rickettsia felis URRWXCal2
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2013-05-29 Released: 2013-08-07
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.256
R-Value Work: 0.213
R-Value Observed: 0.215

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of ADP-ribose pyrophosphatase MutT from Rickettsia felis

Abendroth, J., Clifton, M.C., Lorimer, D., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 35.05 kDa
Atom Count: 2,417
Modelled Residue Count: 273
Deposited Residue Count: 298
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ADP-ribose pyrophosphatase MutT	A, B	149	Rickettsia felis URRWXCal2	Mutation(s): 0 Gene Names: mutT, RF_0595 EC: 3.6.1
UniProt
Find proteins for Q4ULX7 (Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)) Explore Q4ULX7 Go to UniProtKB: Q4ULX7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q4ULX7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.256
R-Value Work: 0.213
R-Value Observed: 0.215
Space Group: P 2₁ 2₁ 2₁
Diffraction Data: https://doi.org/10.18430/M34KYX

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.98	α = 90
b = 63.78	β = 90
c = 71.72	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
Blu-Ice	data collection
XDS	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2013-08-07

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2013-08-07
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.