4KQ2

Glucose1,2cyclic phosphate bound activated state of Yeast Glycogen Synthase

Structural Biology Knowledgebase: 4KQ2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4KQ2

Classification: TRANSFERASE

Total Structure Weight: 332211.20

Macromolecule Entities
Molecule Chains Length Organism Details
Gsy2p A, B, C, D 724 Saccharomyces cerevisiae EC#: 2.4.1.11 IUBMB
Mutation: R589A, R592A
Gene Name(s): GSY2 YLR258W L8479.8

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
U5P
Query on U5P

A, B, C, D URIDINE-5'-MONOPHOSPHATE
C9 H13 N2 O9 P
DJJCXFVJDGTHFX-XVFCMESISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
G6P
Query on G6P

A, B, C, D ALPHA-D-GLUCOSE-6-PHOSPHATE
C6 H13 O9 P
NBSCHQHZLSJFNQ-DVKNGEFBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1S3
Query on 1S3

C (2R,3aR,5R,6S,7S,7aR)-5-(hydroxymethyl)tetrahydro- 3aH-[1,3,2]dioxaphospholo[4,5-b]pyran-2,6,7- triol 2-oxide
Glucose1,2cyclic phosphate (Synonym)
C6 H11 O8 P
PUJJEEQZLDDQPG-VFUOTHLCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BA
Query on BA

A, B, C, D BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A, B, C, D DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.224
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 193.49 α = 90.00
b = 203.98 β = 90.00
c = 206.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-14
  • Released Date: 2013-12-11
  • Deposition author(s): Chikwana, V.M., Hurley, T.D.

Revision History

  • 2014-11-12
    Type: Function and keywords | Details: --
  • 2014-02-05
    Type: Citation | Details: Citation update