4J1P

X-ray crystal structure of bromodomain 2 of human brd2 in complex with rvx208 to 1.08 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.08 Å
  • R-Value Free: 0.159
  • R-Value Work: 0.128

Literature

Macromolecules
Sequence Display for 4J1P

Classification: SIGNALING PROTEIN / INHIBITOR

Total Structure Weight: 13807.88

Macromolecule Entities
Molecule Chains Length Organism Details
Bromodomain containing 2, isoform CRA_a A 114 Homo sapiens Gene Name(s): BRD2 Gene View KIAA9001 RING3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1K0
Query on 1K0

A 2-[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]- 5,7-dimethoxyquinazolin-4(3H)-one
C20 H22 N2 O5
NETXMUIMUZJUTB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1K0 N/A in BindingDB
Kd: 206 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.08 Å
  • R-Value Free: 0.159
  • R-Value Work: 0.128
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 51.10 α = 90.00
b = 66.35 β = 90.00
c = 75.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-01
  • Released Date: 2014-01-15
  • Deposition author(s): Stein, A.J., White, A., Suto, R.K.

Revision History

  • Version 1_0: 2014-01-15

    Type: Initial release