4I0N

Pore forming protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 4I0N

Classification: TOXIN

Total Structure Weight: 33046.11

Macromolecule Entities
Molecule Chains Length Organism Details
Necrotic enteritis toxin B A 289 Clostridium perfringens Fragment: UNP residues 34-322
Gene Name(s): netB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.168
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 167.44 α = 90.00
b = 29.70 β = 99.09
c = 56.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-16
  • Released Date: 2013-03-20
  • Deposition author(s): Yan, X., Porter, C.J., Hardy, S.P., Steer, D., Smith, A.I., Quinset, N., Hughes, V., Cheung, J.K., Keyburn, A.L., Kaldhusdal, M., Moore, R.J., Bannam, T.L., Whisstock, J.C., Rood, J.I.

Revision History

  • Version 1_0: 2013-03-20

    Type: Initial release

  • Version 1_1: 2013-04-10

    Type: Database references

  • Version 1_2: 2017-11-15

    Type: Refinement description