4H1D

Cocrystal structure of GlpG and DFP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 4H1D

Classification: HYDROLASE

Total Structure Weight: 20380.18

Macromolecule Entities
Molecule Chains Length Organism Details
Rhomboid protease GlpG A 179 Escherichia coli EC#: 3.4.21.105 IUBMB
Fragment: UNP Residues 92-270
Gene Name(s): glpG b3424 JW5687
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Intramembrane Proteases

Protein Name: GlpG rhomboid-family intramembrane protease


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DFP
Query on DFP

A DIISOPROPYL PHOSPHONATE
C6 H15 O3 P
BLKXLEPPVDUHBY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.232
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 110.07 α = 90.00
b = 110.07 β = 90.00
c = 124.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-10
  • Released Date: 2013-05-01
  • Deposition author(s): Xue, Y., Ha, Y.

Revision History

  • Version 1_0: 2013-05-01

    Type: Initial release

  • Version 1_1: 2013-05-15

    Type: Database references

  • Version 1_2: 2013-06-26

    Type: Database references