4GG6

Protein complex

Structural Biology Knowledgebase: 4GG6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.246

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GG6

Classification: IMMUNE SYSTEM

Total Structure Weight: 198838.91

Macromolecule Entities
Molecule Chains Length Organism Details
HLA class II histocompatibility antigen, DQ alpha 1 chain A, C 192 Homo sapiens Fragment: EXTRACELLULAR DOMAINS, UNP RESIDUES 24-206
Mutation: T23S, Q31E, G37E, C44Q, V47L, L48F, Q50R, S72I, L73V, I104T, L153F, E158D, S160I, K172E
Gene Name(s): HLA-DQA1 Gene View
HLA class II histocompatibility antigen, DQ beta 1 chain B, D 215 Homo sapiens Fragment: EXTRACELLULAR DOMAINS, UNP RESIDUES 33-224
Mutation: A13G, Y26L, E45G, D57A, H167R, T185I
Gene Name(s): HLA-DQB1 Gene View HLA-DQB
T-CELL RECEPTOR, SP3.4 ALPHA CHAIN E, G 207 Homo sapiens Fragment: EXTRACELLULAR DOMAINS
Gene Name(s):
T-CELL RECEPTOR, SP3.4 BETA CHAIN F, H 245 Homo sapiens Fragment: EXTRACELLULAR DOMAINS
Gene Name(s): TRBC1
Peptide from Alpha/beta-gliadin MM1 I, J 18 Triticum aestivum Fragment: DEAMIDATED ALPHA-I GLIADIN PEPTIDE, UNP RESIDUES 243-260
Mutation: Q3E, Q11E
Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, C N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.246
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 111.71 α = 90.00
b = 134.32 β = 90.00
c = 140.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-06
  • Released Date: 2012-10-24
  • Deposition author(s): Broughton, S.E., Theodossis, A., Petersen, J., Reid, H.H., Rossjohn, J.

Revision History

No revisions since initial release