4G50

Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ168

Structural Biology Knowledgebase: 4G50 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4G50

Classification: Isomerase protein binding

Total Structure Weight: 47179.44

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase A, B 209 Saccharomyces cerevisiae Burkholderia pseudomallei EC#: 5.2.1.8 IUBMB
Fragment: Q12306 residues 13-98, Q3JK38 residues 2-113
Mutation: D44G
Gene Name(s): SMT3 YDR510W D9719.15

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
861
Query on 861

A, B 3-(3,4,5-trimethoxyphenyl)propyl (2S)-1-(benzylsulfonyl)piperidine- 2-carboxylate
C25 H33 N O7 S
WUVVOAPMLQTLBJ-NRFANRHFSA-N
Ligand Explorer
 
JSmol
EDO
Query on EDO

B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
FMT
Query on FMT

A, B FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.170
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 33.63 α = 91.54
b = 35.11 β = 99.90
c = 75.15 γ = 97.23

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-17
  • Released Date: 2012-08-01
  • Deposition author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History

  • 2014-03-12
    Type: Citation | Details: Citation update