4EG0

Crystal Structure of D-alanine--D-alanine ligase from Burkholderia ambifaria

Structural Biology Knowledgebase: 4EG0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.173

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4EG0

Classification: LIGASE

Total Structure Weight: 67765.38

Macromolecule Entities
Molecule Chains Length Organism Details
D-alanine--D-alanine ligase A, B 317 Burkholderia ambifaria EC#: 6.3.2.4 IUBMB
Gene Name(s): ddl BamMC406_0490
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 48.38 α = 90.00
b = 118.11 β = 91.56
c = 56.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-30
  • Released Date: 2012-05-09
  • Deposition author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History

  • 2013-10-30
    Type: Citation | Details: Citation update