Crystal Structure of D-alanine--D-alanine ligase from Burkholderia ambifaria
4EG0
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  •   Molecular Description Hide
    Classification: Ligase
    Structure Weight: 67765.34
    Molecule: D-alanine--D-alanine ligase
    Polymer: 1 Type: protein Length: 317
    Chains: A, B
    EC#: 6.3.2.4   
    Organism: Burkholderia ambifaria MC40-6
    Gene Names: ddl BamMC406_0490
    UniProtKB: Protein Feature View | Search PDB | B1YSS6  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Burkholderia ambifaria   Taxonomy   Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    EDO
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    EDO C2 H6 O2
    1,2-ETHANEDIOL
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Seattle Structural Genomics Center for Infectious Disease

    Deposition:   2012-03-30
    Release:   2012-05-09
    Last Modified (REVDAT):   2013-10-30
     
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    2013-10-30
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   1.65
    R-Value: 0.175 (obs.)
    R-Free: 0.200
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 48.38 α = 90.00 
    b = 118.11 β = 91.56 
    c = 56.93 γ = 90.00