4E1U

[Ru(bpy)2 dppz]2+ bound to DNA

Structural Biology Knowledgebase: 4E1U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.92 Å
  • R-Value Free: 0.149
  • R-Value Work: 0.140

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4E1U

Classification: DNA

Total Structure Weight: 11096.30

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*AP*CP*CP*G)-3' A, B 12 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
R1Z
Query on R1Z

A Delta-[Ru(bpy)2dppz]2+
C38 H26 N8 Ru
NGWQAIWPRVFOPE-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BA
Query on BA

A, B BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.92 Å
  • R-Value Free: 0.149
  • R-Value Work: 0.140
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 24.04 α = 74.67
b = 24.80 β = 84.42
c = 37.52 γ = 76.21

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2012-03-07
  • Released Date: 2012-06-20
  • Deposition author(s): Song, H., Kaiser, J.T., Barton, J.K.

Revision History

  • 2013-06-19
    Type: Citation | Details: Citation update
  • 2013-02-20
    Type: Non-polymer description | Details: --