POP-OUT | CLOSE
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, PPi and Calcium
DOI:10.2210/pdb4dsk/pdb   NDB ID: NA1626
4DSK
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 75908.01
    Molecule: DNA (5'-D(*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*CP*G)-3')
    Polymer: 1 Type: dna Length: 14
    Chains: B
    Molecule: DNA (5'-D(*TP*CP*AP*CP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3')
    Polymer: 2 Type: dna Length: 17
    Chains: C
    Molecule: DNA polymerase
    Polymer: 3 Type: protein Length: 579
    Chains: A
    EC#: 2.7.7.7   
    Fragment: RESIDUES 298-876
    Mutation: A598D
    Organism Geobacillus stearothermophilus
    UniProtKB:   Protein Feature View | Search PDB | E1C9K5  
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Geobacillus stearothermophilus   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3ht3  Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP 
    4DSI  Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus wuth duplex DNA, Se-dGTP and Calcium 
    4dsj  DNA polymerase I from Bacillus stearothermophilus wuth duplex DNA, dGTP and Calcium 
    4dsl  Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA and Calcium 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
    Search 
    Download 
    CA Ca
    CALCIUM ION
    POP
    Search 
    Download 
    POP H2 O7 P2
    PYROPHOSPHATE 2-
    POP:4DSK
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1626
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers: