4DRQ

Exploration of Pipecolate Sulfonamides as Binders of the FK506-Binding Proteins 51 and 52: Complex of FKBP51 with 2-(3-((R)-1-((S)-1-(3,5-dichlorophenylsulfonyl)piperidine-2-carbonyloxy)-3-(3,4-dimethoxy -phenyl)propyl)phenoxy)acetic acid

Structural Biology Knowledgebase: 4DRQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.151
  • R-Value Work: 0.138

Literature

Macromolecules
Sequence Display for 4DRQ

Classification: ISOMERASE

Total Structure Weight: 14692.77

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase FKBP5 A 128 Homo sapiens EC#: 5.2.1.8 IUBMB
Fragment: UNP residues 16-140
Mutation: A19T
Gene Name(s): FKBP5 Gene View AIG6 FKBP51
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0OS
Query on 0OS

A {3-[(1S)-1-[({(2S)-1-[(3,5-dichlorophenyl)sulfonyl]piperidin- 2-yl}carbonyl)oxy]-3-(3,4-dimethoxyphenyl)propyl]phenoxy}acetic acid
C31 H33 Cl2 N O9 S
AOMAGJKZRYWVSR-SVBPBHIXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0OS N/A in BindingDB
IC50: 22600 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.151
  • R-Value Work: 0.138
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 41.97 α = 90.00
b = 54.64 β = 90.00
c = 56.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-17
  • Released Date: 2012-04-18
  • Deposition author(s): Gopalakrishnan, R., Kozany, C., Wang, Y., Hoogeland, B., Bracher, A., Hausch, F., Schneider, S.

Revision History

  • 2012-05-23
    Type: Citation | Details: Citation update