4DRP

Evaluation of Synthetic FK506 Analogs as Ligands for the FK506-Binding Proteins 51 and 52: Complex of FKBP51 with 2-(3-((R)-3-(3,4-dimethoxyphenyl)-1-((S)-1-(2-((1R,2S)-2-ethyl-1-hydroxy-cyclohexyl)-2-oxoacetyl)piperidine-2-carbonyloxy)propyl)phenoxy)acetic acid from cocrystallization

Structural Biology Knowledgebase: 4DRP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DRP

Classification: ISOMERASE

Total Structure Weight: 14665.94

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase FKBP5 A 128 Homo sapiens EC#: 5.2.1.8 IUBMB
Fragment: UNP residues 16-140
Mutation: A19T
Gene Name(s): FKBP5 Gene View AIG6 FKBP51

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0MD
Query on 0MD

A {3-[(1R)-3-(3,4-dimethoxyphenyl)-1-({[(2S)- 1-{[(1R,2S)-2-ethyl-1-hydroxycyclohexyl](oxo)acetyl}piperidin- 2-yl]carbonyl}oxy)propyl]phenoxy}acetic acid
C35 H45 N O10
JLRDMSUQFUWACS-RORDBKJESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0MD N/A in BindingDB
IC50: 3900 nM  BindingMOAD
IC50: 3900 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.220
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.91 α = 90.00
b = 56.56 β = 90.00
c = 57.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-17
  • Released Date: 2012-05-16
  • Deposition author(s): Gopalakrishnan, R., Kozany, C., Gaali, S., Kress, C., Hoogeland, B., Bracher, A., Hausch, F.

Revision History

  • 2012-05-23
    Type: Citation | Details: Citation update