RCSB Protein Data Bank - RCSB PDB - 4DM9 Structure Summary

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The Crystal Structure of Ubiquitin Carboxy-terminal hydrolase L1 (UCHL1) bound to a tripeptide fluoromethyl ketone Z-VAE(OMe)-FMK

DOI:10.2210/pdb4dm9/pdb

4DM9

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Primary Citation

Related Citations in PDB Entry (REMARK 1) Hide

Molecular Description

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Classification:	Hydrolase , Ligase/inhibitor
Structure Weight:	51533.93

Molecule:

Ubiquitin carboxyl-terminal hydrolase isozyme L1

Polymer:

Type:

protein

Length:

228

Chains:

A, B

EC#:

Organism

Homo sapiens

Gene Name

UCHL1

UniProtKB:

| | P09936

Molecule:

Tripeptide fluoromethyl ketone inhibitor Z-VAE(OMe)-FMK

Polymer:

Type:

protein

Length:

Chains:

X, Y

Source

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Polymer: 1

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Escherichia coli

Polymer: 2

Scientific Name:

Synthetic construct

Taxonomy

Related PDB Entries Hide

Identifier Details

2ETL The same protein without fluoromethyl ketone inhbitor

Biologically Interesting Molecules (BIRD)

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Identifier	Image	Name	Type	Class	Chain ID
PRD_001082 Search		Tripeptide fluoromethyl ketone inhibitor Z-VAE(OMe)-FMK	Peptide-like	Inhibitor	X,Y	Ligand Explorer

Modified Residues

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Identifier	Formula	Parent	Type
PHQ Search	C₈ H₇ Cl O₂		nonPolymer
GME Search	C₆ H₁₁ N O₄	GLU	lPeptideLinking
CF0 Search	C H₃ F		nonPolymer

External Domain Annotations Hide
Pfam Classification: 1 Domain - data from Pfam

GO Terms: 35 Terms - data from GO
Structural Biology Knowledgebase Data Hide

Data in orange boxes are gathered from external resources (when available).

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Biological Assembly 1

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Biological assembly 1 assigned by authors

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Deposition Summary

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Authors: Davies, C.W., Chaney, J., Korbel, G., Ringe, D., Petsko, G.A., Ploegh, H., Das, C.

Deposition:	2012-02-07
Release:	2012-05-23
Last Modified (REVDAT):	2012-06-13

Revision History Hide

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2012-12-12
Other

2012-06-13
Citation

Experimental Details

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Method: X-RAY DIFFRACTION
Exp. Data:
Structure Factors
EDS

Unit Cell:
	Length [Å]	Angles [°]
	a = 110.01	α = 90.00
	b = 110.01	β = 90.00
	c = 78.75	γ = 90.00