4DM9

The Crystal Structure of Ubiquitin Carboxy-terminal hydrolase L1 (UCHL1) bound to a tripeptide fluoromethyl ketone Z-VAE(OMe)-FMK

Structural Biology Knowledgebase: 4DM9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 4DM9

Classification: HYDROLASE LIGASE / INHIBITOR

Total Structure Weight: 51533.89

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin carboxyl-terminal hydrolase isozyme L1 A, B 228 Homo sapiens EC#: 3.4.19.12 IUBMB 6 IUBMB
Gene Name(s): UCHL1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Tripeptide fluoromethyl ketone inhibitor Z-VAE(OMe)-FMK X, Y 5 synthetic

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_001082
Query on PRD_001082
X, Y Tripeptide fluoromethyl ketone inhibitor Z-VAE(OMe)-FMK Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.197
  • Space Group: P 4 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 110.01 α = 90.00
b = 110.01 β = 90.00
c = 78.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-07
  • Released Date: 2012-05-23
  • Deposition author(s): Davies, C.W., Chaney, J., Korbel, G., Ringe, D., Petsko, G.A., Ploegh, H., Das, C.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2012-06-13
    Type: Citation | Details: Citation update