4DGC

TRIMCyp cyclophilin domain from Macaca mulatta: cyclosporin A complex

Structural Biology Knowledgebase: 4DGC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 4DGC

Classification: ISOMERASE / IMMUNOSUPPRESSANT

Total Structure Weight: 96186.24

Macromolecule Entities
Molecule Chains Length Organism Details
TRIMCyp A, B, C, D, E 165 Macaca mulatta EC#: 5.2.1.8 IUBMB
Fragment: cyclophilin domain (UNP residues 304-468)
Gene Name(s): PPIA Gene View CYPA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
cyclosporin A F, G, H, I, J 11 Tolypocladium inflatum

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000142
Query on PRD_000142
F, G, H, I, J Cyclosporin A Cyclic peptide /
Immunosuppressant
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.182
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 108.47 α = 90.00
b = 108.47 β = 90.00
c = 423.06 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-25
  • Released Date: 2012-02-08
  • Deposition author(s): Caines, M.E.C., Bichel, K., Price, A.J., McEwan, W.A., James, L.C.

Revision History

  • 2013-02-27
    Type: Other | Details: Add PRD info
  • 2012-04-18
    Type: Citation | Details: Citation update
  • 2012-03-28
    Type: Citation | Details: Citation update