Download MendeleyCrystal Structure of Core-Bradavidin
Airenne, T.T., Maatta, J.A.E., Nordlund, H., Kulomaa, M.S., Johnson, M.S.To be published.
4BBO
Crystal structure of core-bradavidin
- PDB DOI: https://doi.org/10.2210/pdb4BBO/pdb
- Classification: BIOTIN-BINDING PROTEIN
- Organism(s): Bradyrhizobium japonicum
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2012-09-27 Released: 2013-10-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.179
- R-Value Work: 0.147
- R-Value Observed: 0.148
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| BLR5658 PROTEIN | 118 | Bradyrhizobium japonicum | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q89IH6 (Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)) Explore Q89IH6 Go to UniProtKB: Q89IH6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q89IH6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BTN Query on BTN | E [auth A], G [auth B], I [auth C], K [auth D] | BIOTIN C10 H16 N2 O3 S YBJHBAHKTGYVGT-ZKWXMUAHSA-N |  | ||
| GOL Query on GOL | F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | H [auth B], J [auth C], L [auth D] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.179
- R-Value Work: 0.147
- R-Value Observed: 0.148
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 49.946 | α = 90 |
| b = 78.647 | β = 90 |
| c = 100.12 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2013-10-16 Deposition Author(s): Airenne, T.T., Johnson, M.S., Maatta, J.A.E., Hytonen, V.H., Kulomaa, M.S.
Revision History (Full details and data files)
- Version 1.0: 2013-10-16
Type: Initial release - Version 1.1: 2018-01-17
Changes: Data collection - Version 1.2: 2019-05-08
Changes: Data collection, Experimental preparation - Version 1.3: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
