Structures of Three New Crystal Forms of the Ykud L,D-Transpeptidase from B. Subtilis.
Blaise, M., Fuglsang Midtgaard, S., Roi Midtgaard, S., Boesen, T., Thirup, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PUTATIVE L, D-TRANSPEPTIDASE YKUD | 165 | Bacillus subtilis | Mutation(s): 2  EC: 2 | ||
UniProt | |||||
Find proteins for O34816 (Bacillus subtilis (strain 168)) Explore O34816  Go to UniProtKB:  O34816 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O34816 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CME Query on CME | A | L-PEPTIDE LINKING | C5 H11 N O3 S2 | CYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 59.9 | α = 90 |
b = 59.9 | β = 90 |
c = 117.75 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |