Download MendeleyThe structure of DLP12 endolysin exhibits likely an active and inactive conformations.
Kesavan, B., Arockiasamy, A., Krishnaswamy, S.To be published.
4ZPU
The structure of DLP12 endolysin exhibits likely active and inactive conformations.
- PDB DOI: https://doi.org/10.2210/pdb4ZPU/pdb
- Classification: HYDROLASE
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-05-08 Released: 2015-06-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.285
- R-Value Work: 0.221
- R-Value Observed: 0.224
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lysozyme RrrD | 175 | Escherichia coli K-12 | Mutation(s): 0 Gene Names: rrrD, arrD, ybcS, b0555, JW0544 EC: 3.2.1.17 |  | |
UniProt | |||||
Find proteins for P78285 (Escherichia coli (strain K12)) Explore P78285 Go to UniProtKB: P78285 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P78285 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | E [auth A], F [auth B], G [auth C], J [auth D] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| FMT Query on FMT | H [auth C], I [auth C] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.285
- R-Value Work: 0.221
- R-Value Observed: 0.224
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.106 | α = 90 |
| b = 94.131 | β = 90 |
| c = 97.43 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2015-06-03 Deposition Author(s): Kesavan, B., Arockiasamy, A., Krishnaswamy, S.
Revision History (Full details and data files)
- Version 1.0: 2015-06-03
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description, Source and taxonomy
