4ZFF

Dual-acting Fab 5A12 in complex with VEGF


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 4ZFF

Classification: SIGNALING PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 118451.12

Macromolecule Entities
Molecule Chains Length Organism Details
Fragment antigen binding (Fab) 5A12 Heavy chain A, H 228 Homo sapiens
Fragment antigen binding (Fab) 5A12 Light chain B, L 215 Homo sapiens
Vascular endothelial growth factor A C, D 99 Homo sapiens Fragment: UNP residues 217-315
Gene Name(s): VEGFA Gene View VEGF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

L SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.197
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 87.41 α = 90.00
b = 313.89 β = 90.00
c = 51.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-04-21
  • Released Date: 2015-07-01
  • Deposition author(s): Harris, S.F., Wu, P.

Revision History

  • Version 1_0: 2015-07-01

    Type: Initial release

  • Version 1_1: 2015-09-16

    Type: Database references