4YVF

Structure of S-adenosyl-L-homocysteine hydrolase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 4YVF

Classification: HYDROLASE

Total Structure Weight: 97989.77

Macromolecule Entities
Molecule Chains Length Organism Details
Adenosylhomocysteinase A, B 432 Homo sapiens EC#: 3.3.1.1 IUBMB
Gene Name(s): AHCY Gene View SAHH
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAI
Query on NAI

A, B 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH (Synonym)
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
XFA
Query on XFA

A, B 2-{[5-chloro-2-(4-chlorophenoxy)phenyl](2- {[2-(methylamino)ethyl]amino}-2-oxoethyl)amino}- N-(1,3-dihydro-2H-isoindol-2-yl)-N-methylacetamide
C28 H31 Cl2 N5 O3
AOQCCSFIEWPXMC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.199
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 91.53 α = 90.00
b = 134.15 β = 90.00
c = 185.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-03-20
  • Released Date: 2015-11-25
  • Deposition author(s): Akiko, K.

Revision History

  • Version 1_0: 2015-11-25

    Type: Initial release