4XAK

Crystal structure of potent neutralizing antibody m336 in complex with MERS Co-V RBD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 4XAK

Classification: IMMUNE SYSTEM

Total Structure Weight: 155793.67

Macromolecule Entities
Molecule Chains Length Organism Details
Spike glycoprotein A, B 252 Middle east respiratory syndrome-related coronavirus Fragment: Receptor-binding domain (UNP residues 367-601)
Details: MERS-CoV RBD with HRV3C cleavage site and His 6x tag at the C-terminal.
Gene Name(s): S 3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Heavy chain of neutralizing antibody m336 D, H 252 Homo sapiens
Light chain of neutralizing antibody m336 E, L 214 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.198
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 47.79 α = 90.00
b = 146.88 β = 90.00
c = 200.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-12-15
  • Released Date: 2015-08-26
  • Deposition author(s): Zhou, T., Dimtrov, D.S., Ying, T.

Revision History

  • Version 1_0: 2015-08-26

    Type: Initial release

  • Version 1_1: 2015-09-23

    Type: Database references