The 3D structure of D95N mutant DUTPase from phage phi11 of S. aureus reveals the molecular details for the coordination of a structural Mg(II) ion
Bendes, A.A., Leveles, I., Vertessy, B.G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
DUTPase | 169 | Dubowvirus dv11 | Mutation(s): 1  | ||
UniProt | |||||
Find proteins for Q8SDV3 (Staphylococcus phage phi 11) Explore Q8SDV3  Go to UniProtKB:  Q8SDV3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8SDV3 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DUP Query on DUP | G [auth A] I [auth B] K [auth C] M [auth D] N [auth D] | 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE C9 H16 N3 O13 P3 XZLLMTSKYYYJLH-SHYZEUOFSA-N | |||
MG Query on MG | H [auth A] J [auth B] L [auth C] O [auth D] P [auth E] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 108.42 | α = 90 |
b = 108.42 | β = 90 |
c = 167.05 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
ungarian Scientific Research Fund OTKA | Hungary | NK 84008 |
ungarian Scientific Research Fund OTKA | Hungary | K109486 |
Baross Program of the New Hungary Development Plan | Hungary | 3DSTRUCT, MFB-00266/2010 REG-KM-09-1-2009-005 |
Hungarian Academy of Sciences | Hungary | TTK IF-28/201 |
Hungarian Academy of Sciences | Hungary | MedinProt program |
European Union | 283570 |