4UF6

UCH-L5 in complex with ubiquitin-propargyl bound to an activating fragment of INO80G


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.69 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 4UF6

Classification: HYDROLASE

Total Structure Weight: 215071.42

Macromolecule Entities
Molecule Chains Length Organism Details
UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 A, D, G, J 331 Homo sapiens EC#: 3.4.19.12 IUBMB
Details: ACTIVE SITE CYS88 COVALENTLY LINKED TO UBIQUITIN-PROPARGYL
Gene Name(s): UCHL5 Gene View UCH37 AD-019 CGI-70
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
POLYUBIQUITIN-B B, E, H, K 76 Homo sapiens Details: GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5
Gene Name(s): UBB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
NUCLEAR FACTOR RELATED TO KAPPA-B-BINDING PROTEIN C, F, I, L 65 Homo sapiens Fragment: ACTIVATING FRAGMENT OF INO80G DEUBAD DOMAIN, RESIDUES 40-101
Gene Name(s): NFRKB Gene View INO80G
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
AYE
Query on AYE
B, E, H, K NON-POLYMER C3 H7 N --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.69 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.238
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 152.08 α = 90.00
b = 137.79 β = 102.54
c = 98.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-12-23
  • Released Date: 2015-03-04
  • Deposition author(s): Sahtoe, D.D., Van Dijk, W.J., El Oualid, F., Ekkebus, R., Ovaa, H., Sixma, T.K.

Revision History

  • Version 1_0: 2015-03-04

    Type: Initial release

  • Version 1_1: 2015-09-09

    Type: Database references

  • Version 1_2: 2017-09-13

    Type: Data collection