4U6V

Mechanisms of Neutralization of a Human Anti-Alpha Toxin Antibody


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 4U6V

Classification: IMMUNE SYSTEM

Total Structure Weight: 161577.53

Macromolecule Entities
Molecule Chains Length Organism Details
Fab, antigen binding fragment, heavy chain H, K 225 Homo sapiens
Fab, antigen binding fragment, light chain L, M 213 Homo sapiens
Alpha-hemolysin A, B 293 Staphylococcus aureus Gene Name(s): hly hla SAOUHSC_01121
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: BETA-BARREL

Subgroup Name: Adventitious Membrane Proteins: Beta-sheet Pore-forming Toxins/Attack Complexes

Protein Name: α-hemolysin


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, H, K SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.198
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 85.52 α = 90.00
b = 148.51 β = 99.82
c = 93.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-07-29
  • Released Date: 2014-09-17
  • Deposition author(s): Oganesyan, V.Y., Peng, L., Damschroder, M.M., Cheng, L., Sadowska, A., Tkaczyk, C., Sellman, B., Wu, H., Dall'Acqua, W.F.

Revision History

  • Version 1_0: 2014-09-17

    Type: Initial release

  • Version 1_1: 2014-09-24

    Type: Database references

  • Version 1_2: 2014-11-05

    Type: Database references