4PLW

Crystal structure of ancestral apicomplexan malate dehydrogenase with lactate.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 4PLW

Classification: OXIDOREDUCTASE

Total Structure Weight: 146298.89

Macromolecule Entities
Molecule Chains Length Organism Details
malate dehydrogenase A, B, C, D 326 Apicomplexa Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAI
Query on NAI

A, B, C, D 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH (Synonym)
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B, C, D PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.182
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 90.37 α = 90.00
b = 103.74 β = 90.00
c = 143.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-05-19
  • Released Date: 2014-07-02
  • Deposition author(s): Boucher, J.I., Jacobowitz, J.R., Beckett, B.C., Classen, S., Theobald, D.L.

Revision History

  • 2014-07-16
    Type: Database references
  • 2014-09-24
    Type: Structure summary
  • 2014-10-01
    Type: Database references
  • 2015-02-25
    Type: Derived calculations