4ORH

Crystal structure of RNF8 bound to the UBC13/MMS2 heterodimer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.8 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.276

Literature

Macromolecules
Sequence Display for 4ORH

Classification: PROTEIN BINDING / LIGASE

Total Structure Weight: 194211.17

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-conjugating enzyme E2 variant 2 A, E, I 153 Homo sapiens Gene Name(s): UBE2V2 Gene View MMS2 UEV2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin-conjugating enzyme E2 N B, F, J 160 Homo sapiens EC#: 2.3.2.23 IUBMB
Gene Name(s): UBE2N Gene View BLU
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
E3 ubiquitin-protein ligase RNF8 C, G, H, K, L 149 Homo sapiens EC#: 6.3.2 IUBMB
Gene Name(s): RNF8 Gene View KIAA0646
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

C, G, H, K, L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.8 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.276
  • Space Group: P 42 21 2

Unit Cell:

Length (Å) Angle (°)
a = 205.26 α = 90.00
b = 205.26 β = 90.00
c = 235.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-02-11
  • Released Date: 2014-02-26
  • Deposition author(s): Campbell, S.J., Edwards, R.A., Glover, J.N.M.
  • Previous versions: 4EPO

Revision History

  • 2014-11-05
    Type: Structure summary
  • 2014-12-03
    Type: Structure summary