4OQT

LINGO-1/Li81 Fab complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.23 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 4OQT

Classification: MEMBRANE PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 106030.36

Macromolecule Entities
Molecule Chains Length Organism Details
Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 A 478 Homo sapiens Fragment: UNP residues 40-517
Gene Name(s): LINGO1 Gene View LERN1 LRRN6A UNQ201/PRO227
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Light Chain of Li81 Fab, kappa 3 L 215 Homo sapiens Gene Name(s): IGK@
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Heavy Chain of Li81 Fab, VH3-23 H 235 Homo sapiens Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.23 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.192
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 207.47 α = 90.00
b = 207.47 β = 90.00
c = 140.87 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-02-10
  • Released Date: 2014-05-14
  • Deposition author(s): Pepinsky, R.B., Arndt, J.W., Quan, C., Gao, Y., Quintero-Monzon, O., Lee, X., Mi, S.

Revision History

  • Version 1_0: 2014-05-14

    Type: Initial release

  • Version 1_1: 2014-06-18

    Type: Database references