4NM8

Crystal structure of broadly neutralizing antibody CR8043 bound to H3 influenza hemagglutinin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.240

Literature

Macromolecules
Sequence Display for 4NM8

Classification: viral protein / immune system

Total Structure Weight: 318484.50

Macromolecule Entities
Molecule Chains Length Organism Details
Hemagglutinin HA1 Chain A, C, E 323 Influenza a virus Gene Name(s): HA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hemagglutinin HA2 Chain B, D, F 176 Influenza a virus Mutation: R123G
Gene Name(s): HA
Antibody CR8043, Light Chain L, M, N 220 Homo sapiens Gene Name(s): IGKC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Antibody CR8043, Heavy Chain H, I, J 230 Homo sapiens Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, D, E, F N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.240
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 241.49 α = 90.00
b = 142.35 β = 133.46
c = 170.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-11-14
  • Released Date: 2013-12-25
  • Deposition author(s): Lee, P.S., Wilson, I.A.

Revision History

  • Version 1_0: 2013-12-25

    Type: Initial release

  • Version 1_1: 2014-01-22

    Type: Database references

  • Version 1_2: 2017-06-21

    Type: Database references, Source and taxonomy, Structure summary