4MSM

Crystal structure of Schizosaccharomyces pombe AMSH-like protease sst2 E286A mutant bound to ubiquitin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 4MSM

Classification: HYDROLASE / PROTEIN BINDING

Total Structure Weight: 62896.21

Macromolecule Entities
Molecule Chains Length Organism Details
AMSH-like protease sst2 A, C 197 Schizosaccharomyces pombe EC#: 3.4.19 IUBMB
Fragment: catalytic domain, UNP residues 245-435
Mutation: E286A
Gene Name(s): sst2 SPAC19B12.10
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin B, D 81 Homo sapiens Fragment: UNP residues 77-152
Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A, C PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.195
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 57.02 α = 90.00
b = 95.32 β = 90.00
c = 112.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-18
  • Released Date: 2014-06-18
  • Deposition author(s): Shrestha, R.K., Ronau, J.A., Das, C.

Revision History

  • Version 1_0: 2014-06-18

    Type: Initial release