4MFP

The crystal structure of acyltransferase in complex with decanoyl-CoA and Tei pseudoaglycone


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 4MFP

Classification: Transferase / Antibiotic

Total Structure Weight: 42123.79

Macromolecule Entities
Molecule Chains Length Organism Details
Putative uncharacterized protein tcp24 A 345 Actinoplanes teichomyceticus EC#: 2.3.1 IUBMB
Mutation: H196A
Gene Name(s): tcp24
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Teicoplanin pseudoaglycone B 7 Actinoplanes teichomyceticus

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
COA
Query on COA

A COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

B ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GCS
Query on GCS

B D-GLUCOSAMINE
2-AMINO-2-DEOXY-D-GLUCOSE (Synonym)
C6 H13 N O5
MSWZFWKMSRAUBD-QZABAPFNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DKA
Query on DKA

B DECANOIC ACID
C10 H20 O2
GHVNFZFCNZKVNT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_001169
Query on PRD_001169
B Teicoplanin pseudoaglycone Glycopeptide /
Antibiotic
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.177
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 134.11 α = 90.00
b = 134.11 β = 90.00
c = 49.44 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-28
  • Released Date: 2014-09-03
  • Deposition author(s): Lyu, S.Y., Liu, Y.C., Chang, C.Y., Huang, C.J., Li, T.L.

Revision History

  • Version 1_0: 2014-09-03

    Type: Initial release

  • Version 1_1: 2014-09-10

    Type: Database references