4M2G

Crystal structure of non-heme iron oxygenase OrfP in complex with Fe, succinate, and (3R,4R)-dihydroxy-L-Arg


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 4M2G

Classification: OXIDOREDUCTASE

Total Structure Weight: 165862.47

Macromolecule Entities
Molecule Chains Length Organism Details
L-arginine beta-hydroxylase A, B, C, D 364 Streptomyces lavendulae Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2OR
Query on 2OR

C, D amino{[(2R,3R,4S)-4-amino-2,3,5-trihydroxy- 5-oxopentyl]amino}methaniminium
C6 H15 N4 O4
LYAOXRAIEOXDDL-UZBSEBFBSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SIN
Query on SIN

A, B, C, D SUCCINIC ACID
C4 H6 O4
KDYFGRWQOYBRFD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A, B, C, D FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.214
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 67.29 α = 90.00
b = 116.21 β = 91.66
c = 96.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-05
  • Released Date: 2014-06-25
  • Deposition author(s): Chang, C.Y., Liu, Y.C., Lyu, S.Y., Wu, C.C., Li, T.L.

Revision History

  • Version 1_0: 2014-06-25

    Type: Initial release