Crystal structure of Vibrio cholera major pseudopilin EpsG
Vago, F.S., Raghunathan, K., Jens, J.C., Wedemeyer, W.J., Bagdasarian, M., Brunzelle, J.S., Arvidson, D.N.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Type II secretion system protein G | 120 | Vibrio cholerae O1 biovar El Tor str. N16961 | Mutation(s): 0  Gene Names: epsG, VC_2730 | ||
UniProt | |||||
Find proteins for P45773 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore P45773  Go to UniProtKB:  P45773 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P45773 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PT Query on PT | AA [auth B] EB [auth F] GC [auth L] HA [auth C] LB [auth I] | PLATINUM (II) ION Pt HRGDZIGMBDGFTC-UHFFFAOYSA-N | |||
SO4 Query on SO4 | AB [auth E] AC [auth K] BC [auth K] CA [auth B] GB [auth F] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
ZN Query on ZN | BB [auth F] CC [auth L] DA [auth C] DC [auth L] EA [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CA Query on CA | CB [auth F] DB [auth F] EC [auth L] GA [auth C] KB [auth I] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CL Query on CL | BA [auth B] HC [auth L] PA [auth D] R [auth A] RC [auth R] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA Query on NA | MA [auth D] P [auth A] S [auth A] V [auth B] Y [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 88.61 | α = 90 |
b = 70.015 | β = 103.29 |
c = 131.544 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
PHENIX | model building |
SHARP | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
SCALEPACK | data scaling |
PHENIX | phasing |