4LST

Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 clade C strain ZM176.66 gp120


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 4LST

Classification: viral protein / immune system

Total Structure Weight: 88611.35

Macromolecule Entities
Molecule Chains Length Organism Details
ENVELOPE GLYCOPROTEIN GP120 of HIV-1 clade C G 355 Human immunodeficiency virus 1 Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HEAVY CHAIN OF ANTIBODY VRC01 H 224 Homo sapiens
LIGHT CHAIN OF ANTIBODY VRC01 L 210 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

G N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.190
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 68.11 α = 90.00
b = 77.98 β = 90.00
c = 200.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-23
  • Released Date: 2013-08-21
  • Deposition author(s): Zhou, T., Moquin, S., Kwong, P.D.

Revision History

  • Version 1_0: 2013-08-21

    Type: Initial release

  • Version 1_1: 2013-09-04

    Type: Database references

  • Version 1_2: 2013-09-25

    Type: Database references

  • Version 1_3: 2014-05-07

    Type: Other