4LSL

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with (E)-3-(3-(4-chloro-2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)phenyl)acrylonitrile (JLJ476), a non-nucleoside inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.69 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.244

Literature

Macromolecules
Sequence Display for 4LSL

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 114438.55

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 reverse transcriptase, p66 subunit A 557 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: p66 subunit, UNP residues 600-1154
Mutation: K172A, K173A, C280S
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HIV-1 reverse transcriptase, p51 subunit B 428 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: p51 subunit, UNP residues 600-1027
Mutation: C280S
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1YQ
Query on 1YQ

A (2E)-3-(3-{4-chloro-2-[2-(2,4-dioxo-3,4-dihydropyrimidin- 1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile
4-dioxo- 3, (Synonym)
C21 H16 Cl N3 O4
AXHHDHSEUVTPBV-DUXPYHPUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 224.87 α = 90.00
b = 69.32 β = 106.38
c = 104.34 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-22
  • Released Date: 2013-12-25
  • Deposition author(s): Frey, K.M., Anderson, K.S.

Revision History

  • Version 1_0: 2013-12-25

    Type: Initial release

  • Version 1_1: 2014-05-07

    Type: Database references

  • Version 1_2: 2017-11-15

    Type: Refinement description