4KO0

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH an anilinylpyrimidine derivative (JLJ-135)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.237

Literature

Macromolecules
Sequence Display for 4KO0

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 114655.34

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 reverse transcriptase, p66 subunit A 557 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: p66
Mutation: K172A, K173A, C280S
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HIV-1 reverse transcriptase, p51 subunit B 428 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: p51
Mutation: C280S
Gene Name(s): gag-pol

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
JLJ
Query on JLJ

A 4-[(4-methoxypyrimidin-2-yl)amino]-2-[(3- methylbut-2-en-1-yl)oxy]benzonitrile
C17 H18 N4 O2
VFPQRVJYEMSZLR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.237
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 162.21 α = 90.00
b = 73.95 β = 100.23
c = 109.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-10
  • Released Date: 2013-08-14
  • Deposition author(s): Das, K., Bauman, J.D., Arnold, E.

Revision History

  • Version 1_0: 2013-08-14

    Type: Initial release

  • Version 1_1: 2013-09-04

    Type: Database references