4KKO

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 4-((4-methoxy-6-(2-morpholinoethoxy)-1,3,5-triazin-2-yl)amino)-2-((3-methylbut-2-en-1-yl)oxy)benzonitrile (JLJ513), a non-nucleoside inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.89 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.246

Literature

Macromolecules
Sequence Display for 4KKO

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 114471.23

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 reverse transcriptase, p66 subunit A 557 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: p66 subunit, UNP residues 600-1154
Mutation: K172A, K173A, C280S
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HIV-1 reverse transcriptase, p51 subunit B 428 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: p51 subunit, UNP residues 600-1027
Mutation: C280S
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1RE
Query on 1RE

A 4-({4-methoxy-6-[2-(morpholin-4-yl)ethoxy]- 1,3,5-triazin-2-yl}amino)-2-(3-methylbutoxy)benzonitrile
C22 H30 N6 O4
VZBHPTCAQDOYJZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.89 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.246
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 162.58 α = 90.00
b = 73.89 β = 100.16
c = 109.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-06
  • Released Date: 2013-08-14
  • Deposition author(s): Frey, K.M., Anderson, K.S.

Revision History

  • Version 1_0: 2013-08-14

    Type: Initial release

  • Version 1_1: 2013-09-04

    Type: Database references

  • Version 1_2: 2017-11-15

    Type: Refinement description