4K8E

OYE1-W116V complexed with the aromatic product of (R)-carvone dismutation

Structural Biology Knowledgebase: 4K8E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.27 Å
  • R-Value Free: 0.127
  • R-Value Work: 0.107

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4K8E

Classification: OXIDOREDUCTASE

Total Structure Weight: 46507.95

Macromolecule Entities
Molecule Chains Length Organism Details
NADPH dehydrogenase 1 A 400 Saccharomyces pastorianus EC#: 1.6.99.1 IUBMB
Mutation: W116V
Gene Name(s): OYE1

Small Molecules
Ligands 7 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PGE
Query on PGE

A TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
0WV
Query on 0WV

A 2-methyl-5-(prop-1-en-2-yl)phenol
C10 H12 O
HHTWOMMSBMNRKP-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.27 Å
  • R-Value Free: 0.127
  • R-Value Work: 0.107
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 141.13 α = 90.00
b = 141.13 β = 90.00
c = 42.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-18
  • Released Date: 2013-10-09
  • Deposition author(s): Sullivan, B., Pompeu, Y.A., Stewart, J.D.

Revision History

No revisions since initial release