4K85

Crystal structure of human ceramide-1-phosphate transfer protein (CPTP) in complex with 12:0 Ceramide-1-Phosphate (12:0-C1P)

Structural Biology Knowledgebase: 4K85 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4K85

Classification: LIPID TRANSPORT

Total Structure Weight: 100184.42

Macromolecule Entities
Molecule Chains Length Organism Details
Glycolipid transfer protein domain-containing protein 1 A, B, C, D 215 Homo sapiens Gene Name(s): CPTP Gene View GLTPD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1PZ
Query on 1PZ

A, B, C, D (2S,3R,4E)-2-(dodecanoylamino)-3-hydroxyoctadec- 4-en-1-yl dihydrogen phosphate
C30 H60 N O6 P
KXEMZGPJXBKYJP-VARSQMIESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.181
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.19 α = 90.00
b = 132.68 β = 96.98
c = 62.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-17
  • Released Date: 2013-07-17
  • Deposition author(s): Simanshu, D.K., Brown, R.E., Patel, D.J.

Revision History

  • 2013-09-11
    Type: Citation | Details: Citation update