4K7V

OYE1-W116A complexed with (R)-carvone

Structural Biology Knowledgebase: 4K7V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.52 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.145

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4K7V

Classification: OXIDOREDUCTASE

Total Structure Weight: 45907.60

Macromolecule Entities
Molecule Chains Length Organism Details
NADPH dehydrogenase 1 A 400 Saccharomyces pastorianus EC#: 1.6.99.1 IUBMB
Mutation: W116A
Gene Name(s): OYE1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1PE
Query on 1PE

A PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
07V
Query on 07V

A (5R)-2-methyl-5-(prop-1-en-2-yl)cyclohex- 2-en-1-one
R-carvone (Synonym)
C10 H14 O
ULDHMXUKGWMISQ-SECBINFHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.52 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.145
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 140.85 α = 90.00
b = 140.85 β = 90.00
c = 42.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-17
  • Released Date: 2013-10-09
  • Deposition author(s): Sullivan, B., Pompeu, Y.A., Stewart, J.D.

Revision History

No revisions since initial release