4JDO

Secreted chlamydial protein pgp3, coiled-coil deletion


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 4JDO

Classification: CELL INVASION

Total Structure Weight: 208827.89

Macromolecule Entities
Molecule Chains Length Organism Details
Virulence plasmid protein pGP3-D A, B, C..., D, E, F, G, H, IA, B, C, D, E, F, G, H, I 219 Chlamydia trachomatis Fragment: N-terminal and C-terminal domain fusion
Mutation: ΔG70, ΔL71, ΔD72, ΔA73, ΔE74, ΔK75, ΔA76, ΔY77, ΔQ78, ΔL79, ΔI80, ΔL81, ΔE82, ΔK83, ΔL84, ΔG85, ΔN86, ΔQ87, ΔI88, ΔL89, ΔD90, ΔG91, ΔI92, ΔA93, ΔD94, ΔT95, ΔI96, ΔV97, ΔD98, ΔS99, ΔT100, ΔV101, ΔQ102, ΔD103, ΔI104, ΔL105, ΔD106, ΔK107, ΔI108, ΔT109, ΔT110, ΔD111, ΔP112, ΔS113, ΔL114
Gene Name(s): ERS082928_02094
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A, D, G SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F, G, H, I L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.184
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 146.24 α = 90.00
b = 146.24 β = 90.00
c = 161.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-25
  • Released Date: 2013-06-05
  • Deposition author(s): Galaleldeen, A., Taylor, A.B., Chen, D., Holloway, S.P., Zhong, G., Hart, P.J.

Revision History

  • Version 1_0: 2013-06-05

    Type: Initial release

  • Version 1_1: 2013-07-17

    Type: Database references

  • Version 1_2: 2013-10-09

    Type: Database references

  • Version 1_3: 2017-05-31

    Type: Structure summary