4IW0

Crystal structure and mechanism of activation of TBK1

Structural Biology Knowledgebase: 4IW0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.237

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IW0

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 76437.81

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase TBK1 A 658 Homo sapiens EC#: 2.7.11.1 IUBMB
Mutation: D135N
Gene Name(s): TBK1 Gene View NAK

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BX7
Query on BX7

A N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin- 2-yl]amino}phenyl)pyrrolidine-1-carboxamide
C23 H26 I N7 O2 S
VAVXGGRQQJZYBL-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.237
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 228.91 α = 90.00
b = 228.91 β = 90.00
c = 97.98 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-23
  • Released Date: 2013-03-13
  • Deposition author(s): Larabi, A., Devos, J.M., Ng, S.-L., Nanao, M.H., Round, A., Maniatis, T., Panne, D.

Revision History

  • 2013-05-22
    Type: Citation | Details: Citation update