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A Y37F mutant of C.Esp1396I bound to its highest affinity operator site OM
DOI:10.2210/pdb4ivz/pdb   NDB ID: NA2238
4IVZ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 61316.38
    Molecule: Regulatory protein
    Polymer: 1 Type: protein Length: 82
    Chains: A, B, E, F
    Mutation: Y37F
    Organism Enterobacter sp. RFL1396
    Gene Name esp1396IC
    UniProtKB:   Protein Feature View | Search PDB | Q8GGH0  
    Molecule: DNA (5'-D(*AP*TP*GP*TP*AP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*GP*AP*CP*A)-3')
    Polymer: 2 Type: dna Length: 19
    Chains: C, G
    Details: 19 base OM operator
    Molecule: DNA (5'-D(*TP*TP*GP*TP*CP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*TP*AP*CP*A)-3')
    Polymer: 3 Type: dna Length: 19
    Chains: D, H
    Details: 19 base OM operator complement
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Enterobacter sp.   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3CLC  Native DNA bound tetramer 
    3FYA  R35A Mutant free protein 
    3G5G  Native free protein 
    3S8Q  Native DNA bound dimer (OL) 
    3UFD  Native DNA bound dimer (OM) 
    4F8D  R46A Mutant free protein 
    4FBI  R46A Mutant free protein 
    4FN3  S52A Mutant free protein 
    4I6R  Native free protein (High Resolution) 
    4I6T  T36A Mutant free protein 
    4I6U  Y37F Mutant free protein 
    4I8T  Native DNA Bound Dimer (OR) 
    4IA8  Y37A Mutant free protein 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2238
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Martin, R.N.A.,  McGeehan, J.E.,  Kneale, G.G.

    Deposition:   2013-01-23
    Release:   2014-01-29
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.10
    R-Value: 0.172 (obs.)
    R-Free: 0.215
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 47.54 α = 90.00 
    b = 146.70 β = 93.21 
    c = 47.79 γ = 90.00