4IR3

Crystal Structure of the bromodomain of human BAZ2B in complex with 1-[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone (GSK2833282A)

Structural Biology Knowledgebase: 4IR3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IR3

Classification: TRANSCRIPTION

Total Structure Weight: 14241.43

Macromolecule Entities
Molecule Chains Length Organism Details
Bromodomain adjacent to zinc finger domain protein 2B A 117 Homo sapiens Fragment: Bromodomain (residues 2054-2168)
Gene Name(s): BAZ2B Gene View KIAA1476

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1FK
Query on 1FK

A 1-[7-amino-1-(pyrimidin-2-yl)indolizin-3- yl]ethanone
C14 H12 N4 O
PSDYTFPEBOCDIW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.210
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 82.10 α = 90.00
b = 96.42 β = 90.00
c = 57.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-14
  • Released Date: 2013-01-23
  • Deposition author(s): Chaikuad, A., Felletar, I., Chung, C.W., Drewry, D., Chen, P., Filippakopoulos, P., Fedorov, O., Krojer, T., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)

Revision History

  • 2016-04-20
    Type: Citation | Details: Citation update
  • 2015-10-21
    Type: Citation | Details: Citation update
  • 2015-09-09
    Type: Citation | Details: Citation update
  • 2015-04-22
    Type: Citation | Details: Citation update
  • 2015-04-15
    Type: Citation | Details: Citation update