Tdt core in complex with inhibitor (2Z,5E)-6-[4-(4-fluorobenzoyl)-1H-pyrrol-2-yl]-2-hydroxy-4-oxohexa-2,5-dienoic acid and ssDNA
DOI:10.2210/pdb4iqw/pdb   NDB ID: NA2202
4IQW
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/transferase Inhibitor/dna
    Structure Weight: 45173.21
    Molecule: DNA nucleotidylexotransferase
    Polymer: 1 Type: protein Length: 381
    Chains: A
    EC#: 2.7.7.31   
    Fragment: SEE REMARK 999
    Mutation: L398A
    Organism: Mus musculus
    Gene Names: Dntt Tdt
    UniProtKB: Protein Feature View | Search PDB | P09838  
    Molecule: 5'-D(*GP*CP*CP*G)-3'
    Polymer: 2 Type: dna Length: 4
    Chains: C
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4IQT    
    4IQU    
    4IQV    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    1FQ
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    1FQ C17 H12 F N O5
    (2Z,5E)-6-[4-(4-fluorobenzoyl)-1H-pyrrol- 2-yl]-2-hydroxy-4-oxohexa-2,5-dienoic acid
    1FQ:4IQW
    NA
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    NA Na
    SODIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2202
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Gouge, J.,  Delarue, M.

    Deposition:   2013-01-13
    Release:   2013-09-04
    Last Modified (REVDAT):   2013-10-09
     
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    2013-10-09
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.60
    R-Value: 0.190 (obs.)
    R-Free: 0.229
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 46.65 α = 90.00 
    b = 84.67 β = 90.00 
    c = 114.73 γ = 90.00