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The 1.7A crystal structure of humanized Xenopus MDM2 with RO5045337
4IPF
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ligase/antagonist
    Structure Weight: 10751.40
    Molecule: E3 ubiquitin-protein ligase Mdm2
    Polymer: 1 Type: protein Length: 85
    Chains: A
    EC#: 6.3.2   
    Fragment: UNP RESIDUES 21-105
    Mutation: I50L, P92H, L95I
    Organism Xenopus laevis
    Gene Name mdm2
    UniProtKB:   Protein Feature View | Search PDB | P56273  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: Clawed frog,common platanna,platanna Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1RV1  EARLIER STRUCTURE WITH A RELATED CIS-IMIDAZOLINE COMPOUND 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    1F0
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    1F0 C38 H48 Cl2 N4 O4 S
    [(4S,5R)-2-(4-tert-butyl-2-ethoxyphenyl)- 4,5-bis(4-chlorophenyl)-4,5-dimethyl-4,5- dihydro-1H-imidazol-1-yl]{4-[3-(methylsulfonyl)propyl]piperazin- 1-yl}methanone
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Graves, B.J.,  Lukacs, C.,  Kammlott, R.U.,  Crowther, R.

    Deposition:   2013-01-09
    Release:   2013-02-20
    Last Modified (REVDAT):   2013-04-24
     
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    2013-04-24
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   1.70
    R-Value: 0.209 (obs.)
    R-Free: 0.229
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 43.08 α = 90.00 
    b = 67.49 β = 90.00 
    c = 66.72 γ = 90.00