4IHA

Crystal structure of rice DWARF14 (D14) in complex with a GR24 hydrolysis intermediate

Structural Biology Knowledgebase: 4IHA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IHA

Classification: HYDROLASE

Total Structure Weight: 58968.07

Macromolecule Entities
Molecule Chains Length Organism Details
Dwarf 88 esterase A, B 268 Oryza sativa EC#: 3.1 IUBMB
Fragment: UNP residues 51-318
Gene Name(s): D14 D88 HTD2 Os03g0203200 LOC_Os03g10620
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OPL
Query on OPL

A, B (2R,3R)-2,4,4-trihydroxy-3-methylbutanal
C5 H10 O4
NTSABUYTFOFFJR-DMTCNVIQSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.181
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.19 α = 90.00
b = 88.73 β = 90.00
c = 118.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-18
  • Released Date: 2013-01-23
  • Deposition author(s): Zhou, X.E., Zhao, L.-H., Wu, Z.-S., Yi, W., Li, S., Li, Y., Xu, Y., Xu, T.-H., Liu, Y., Chen, R.-Z., Kovach, A., Kang, Y., Hou, L., He, Y., Zhang, C., Melcher, K., Xu, H.E.

Revision History

  • 2013-10-23
    Type: Citation | Details: Citation update