4IC7

Crystal structure of the ERK5 kinase domain in complex with an MKK5 binding fragment

Structural Biology Knowledgebase: 4IC7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 4IC7

Classification: TRANSFERASE

Total Structure Weight: 128995.37

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 7 A, D 442 Homo sapiens EC#: 2.7.11.24 IUBMB
Gene Name(s): MAPK7 Gene View BMK1 ERK5 PRKM7
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Dual specificity mitogen-activated protein kinase kinase 5 B, E 126 Homo sapiens EC#: 2.7.12.2 IUBMB
Gene Name(s): MAP2K5 Gene View MEK5 MKK5 PRKMK5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, D PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.211
  • Space Group: P 43
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.37 α = 90.00
b = 69.37 β = 90.00
c = 271.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-10
  • Released Date: 2013-02-13
  • Deposition author(s): Gogl, G., Remenyi, A.

Revision History

  • 2013-08-07
    Type: Citation | Details: Citation update