Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P3221 DOI:10.2210/pdb4i3r/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Viral Protein/immune System Structure Weight: 69378.04 Molecule: Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) Polymer: 1 Type: protein Length: 190 Chains: G Organism Human immunodeficiency virus Gene Name env UniProtKB:   Protein Feature View | Search PDB | Q3ZLH8     Molecule: Heavy chain of VRC-PG04 Fab Polymer: 2 Type: protein Length: 228 Chains: H Organism Homo sapiens Molecule: Light chain of VRC-PG04 Fab Polymer: 3 Type: protein Length: 208 Chains: L Organism Homo sapiens     Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus   Taxonomy   Expression System: Homo sapiens   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Expression System: Homo sapiens   Polymer: 3 Scientific Name: Homo sapiens   Taxonomy   Expression System: Homo sapiens       Related PDB Entries Hide Identifier Details 3ngb    3se8    3se9    3tyg    4I3S        Ligand Chemical Component Hide Identifier Formula Name Interactions NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 10 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Joyce, M.G.,  Biertumpfel, C.,  Nabel, G.J.,  Kwong, P.D. Deposition:   2012-11-26 Release:   2013-01-09 Last Modified (REVDAT):   2013-02-13     Revision History    Hide Mouse over text for details 2013-02-13 Citation 2013-01-23 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   3.00 R-Value: 0.186 (obs.) R-Free: 0.245 Space Group: P 32 2 1 Unit Cell:   Length [Å] Angles [°] a = 158.91 α = 90.00  b = 158.91 β = 90.00  c = 80.27 γ = 120.00      Molecule of the Month Hide Epidermal Growth Factor Nanobodies Antibodies Hemagglutinin