4HLQ

Crystal structure of human rab1b bound to GDP and BEF3 in complex with the GAP domain of TBC1D20 from homo sapiens

Structural Biology Knowledgebase: 4HLQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HLQ

Classification: HYDROLASE ACTIVATOR / PROTEIN TRANSPORT

Total Structure Weight: 276727.63

Macromolecule Entities
Molecule Chains Length Organism Details
TBC1 domain family member 20 A, C, E, G, I 305 Homo sapiens Gene Name(s): TBC1D20 Gene View C20orf140
Ras-related protein Rab-1B B, D, F, H, J 175 Homo sapiens Gene Name(s): RAB1B Gene View

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

B, D, F, H, J GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, C, E, I SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BEF
Query on BEF

B, D, F, H, J BERYLLIUM TRIFLUORIDE ION
Be F3
OGIAHMCCNXDTIE-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B, D, F, H, J MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.206
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 88.17 α = 90.00
b = 118.64 β = 90.00
c = 290.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-17
  • Released Date: 2013-01-16
  • Deposition author(s): Gazdag, E.M., Gavriljuk, K., Itzen, A., Koetting, C., Gerwert, K., Goody, R.S.

Revision History

No revisions since initial release