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New Delhi Metallo-beta-Lactamase-1 1.05 A structure Complexed with Hydrolyzed Ampicillin
4HL2
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/antibiotic
    Structure Weight: 52932.41
    Molecule: Beta-lactamase NDM-1
    Polymer: 1 Type: protein Length: 243
    Chains: A, B
    EC#: 3.5.2.6   
    Organism: Klebsiella pneumoniae
    Gene Name: blaNDM-1
    UniProtKB: Protein Feature View | Search PDB | C7C422  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

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  •   Source Hide
    Polymer: 1
    Scientific Name: Klebsiella pneumoniae   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3RKJ  NDM1, delta-38 construct 
    3RKK  NDM1, delta-36NY construct 
    3SBL  NDM1, delta-36NY construct, different crystals form 
    3SFP  NDM1, delta-36NY construct, one-Zn-bound 
    3SRX  NDM1, delta-36NY construct, two Cd-bound 
    4GYQ  NDM1, delta-30 construct, D223A mutant 
    4GYU  NDM1, delta-30 construct, A121F mutant 
    4H0D  NDM1, delta-30 construct, two Mn-bound and hydrolized ampicillin 
    4HKY  NDM1, delta-30 construct, two Cd-bound and partial faropenem 
    4HL1  NDM1, delta-30 construct, two Cd-bound and partial ampicillin 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    EDO
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    EDO C2 H6 O2
    1,2-ETHANEDIOL
    ZN
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    ZN Zn
    ZINC ION
    ZZ7
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    ZZ7 C16 H21 N3 O5 S
    (2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]- 5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid
    ZZ7:4HL2
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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